@CrazyHenry 2018-04-20T06:02:11.000000Z 字数 6850 阅读 3574

install faiss尝试intel MKL

hhhhfaiss

Author：李英民 | Henry

E-mail: li_yingmin@outlookdotcom

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Home: https://liyingmin.wixsite.com/henry

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转载请保留上述引用内容，谢谢配合！

1.到官网下载Intel MKL

版本：MLK 2017.0.098 (2017 Initial Release)

2.install

# you may have to set the LD_LIBRARY_PATH=$MKLROOT/lib/intel64 at runtime.
# If at runtime you get the error:
#   Intel MKL FATAL ERROR: Cannot load libmkl_avx2.so or libmkl_def.so.
# You may add set
#   LD_PRELOAD=$MKLROOT/lib/intel64/libmkl_core.so:$MKLROOT/lib/intel64/libmkl_sequential.so
# at runtime as well.
echo 'export LD_LIBRARY_PATH="$MKLROOT/lib/intel64:$LD_LIBRARY_PATH"' >> ~/.bashrc
echo 'export LD_PRELOAD="$MKLROOT/lib/intel64/libmkl_core.so:$MKLROOT/lib/intel64/libmkl_sequential.so:$LD_PRELOAD"' >> ~/.bashrc
source ~/.bashrc

解压
bash install.sh
选3，user级别安装
但之后貌似还是需要by root install如果没有lisence file？
$MKLROOT = /home/liyingmin/intel/compilers_and_libraries/linux/mkl
echo 'export LD_LIBRARY_PATH="/home/liyingmin/intel/compilers_and_libraries/linux/mkl/lib/intel64:$LD_LIBRARY_PATH"' >> ~/.bashrc
echo 'export LD_PRELOAD="/home/liyingmin/intel/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_core.so:/home/liyingmin/intel/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_sequential.so:$LD_PRELOAD"' >> ~/.bashrc
source ~/.bashrc

3.重新make

make uninstall #也许要切换到root
make clean
make

4.测试

A basic usage example is in
demos/demo_ivfpq_indexing
it makes a small index, stores it and performs some searches. A normal runtime is around 20s. With a fast machine and Intel MKL's BLAS it runs in 2.5s.

速度确实快了很多！

5.GPU机子install

先修改makefie.inc

取消MKL的注释，注释掉openblas

修改路径：$MKLROOT = /home/users/yingmin.li/intel/compilers_and_libraries/linux/mkl


# Copyright (c) 2015-present, Facebook, Inc.
# All rights reserved.
#
# This source code is licensed under the BSD+Patents license found in the
# LICENSE file in the root directory of this source tree.
# -*- makefile -*-
# tested on CentOS 7, Ubuntu 16 and Ubuntu 14, see below to adjust flags to distribution.
CC=gcc
CXX=g++
CFLAGS=-fPIC -m64 -Wall -g -O3 -mavx -msse4 -mpopcnt -fopenmp -Wno-sign-compare -fopenmp
CXXFLAGS=$(CFLAGS) -std=c++11
LDFLAGS=-g -fPIC  -fopenmp
# common linux flags
SHAREDEXT=so
SHAREDFLAGS=-shared
FAISSSHAREDFLAGS=-shared
##########################################################################
# Uncomment one of the 4 BLAS/Lapack implementation options
# below. They are sorted # from fastest to slowest (in our
# experiments).
##########################################################################
#
# 1. Intel MKL
#
# This is the fastest BLAS implementation we tested. Unfortunately it
# is not open-source and determining the correct linking flags is a
# nightmare. See
#
#   https://software.intel.com/en-us/articles/intel-mkl-link-line-advisor
#
# The latest tested version is MLK 2017.0.098 (2017 Initial Release) and can
# be downloaded here:
#
#   https://registrationcenter.intel.com/en/forms/?productid=2558&licensetype=2
#
# The following settings are working if MLK is installed on its default folder:
MKLROOT=/home/liyingmin/intel/compilers_and_libraries/linux/mkl/
BLASLDFLAGS=-Wl,--no-as-needed -L$(MKLROOT)/lib/intel64   -lmkl_intel_ilp64 \
 -lmkl_core -lmkl_gnu_thread -ldl -lpthread
BLASCFLAGS=-DFINTEGER=long
# you may have to set the LD_LIBRARY_PATH=/home/liyingmin/intel/compilers_and_libraries/linux/mkl/lib/intel64 at runtime.
# If at runtime you get the error:
#   Intel MKL FATAL ERROR: Cannot load libmkl_avx2.so or libmkl_def.so.
# You may add set
#   LD_PRELOAD=/home/liyingmin/intel/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_core.so:/home/liyingmin/intel/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_sequential.so
# at runtime as well.
#
# 2. Openblas
#
# The library contains both BLAS and Lapack. About 30% slower than MKL. Please see 
#   https://github.com/facebookresearch/faiss/wiki/Troubleshooting#slow-brute-force-search-with-openblas
# to fix performance problemes with OpenBLAS 
#BLASCFLAGS=-DFINTEGER=int
# This is for Centos:
#BLASLDFLAGS?=/usr/lib64/libopenblas.so.0
# for Ubuntu 16:
# sudo apt-get install libopenblas-dev python-numpy python-dev
# BLASLDFLAGS?=/usr/lib/libopenblas.so.0
# for Ubuntu 14:
# sudo apt-get install libopenblas-dev liblapack3 python-numpy python-dev
# BLASLDFLAGS?=/usr/lib/libopenblas.so.0 /usr/lib/lapack/liblapack.so.3.0
#
# 3. Atlas
#
# Automatically tuned linear algebra package. As the name indicates,
# it is tuned automatically for a give architecture, and in Linux
# distributions, it the architecture is typically indicated by the
# directory name, eg. atlas-sse3 = optimized for SSE3 architecture.
#
# BLASCFLAGS=-DFINTEGER=int
# BLASLDFLAGS=/usr/lib64/atlas-sse3/libptf77blas.so.3 /usr/lib64/atlas-sse3/liblapack.so
#
# 4. reference implementation
#
# This is just a compiled version of the reference BLAS
# implementation, that is not optimized at all.
#
# BLASCFLAGS=-DFINTEGER=int
# BLASLDFLAGS=/usr/lib64/libblas.so.3 /usr/lib64/liblapack.so.3.2
#
##########################################################################
# SWIG and Python flags
##########################################################################
# SWIG executable. This should be at least version 3.x
SWIGEXEC=swig
# The Python include directories for a given python executable can
# typically be found with
#
# python -c "import distutils.sysconfig; print distutils.sysconfig.get_python_inc()"
# python -c "import numpy ; print numpy.get_include()"
#
# or, for Python 3, with
#
# python3 -c "import distutils.sysconfig; print(distutils.sysconfig.get_python_inc())"
# python3 -c "import numpy ; print(numpy.get_include())"
#
PYTHONCFLAGS=-I/usr/include/python2.7/ -I/usr/lib64/python2.7/site-packages/numpy/core/include/
###########################################################################
# Cuda GPU flags
###########################################################################
# root of the cuda 8 installation
CUDAROOT=/usr/local/cuda-8.0/
CUDACFLAGS=-I$(CUDAROOT)/include
NVCC=$(CUDAROOT)/bin/nvcc
NVCCFLAGS= $(CUDAFLAGS) \
   -I $(CUDAROOT)/targets/x86_64-linux/include/ \
   -Xcompiler -fPIC \
   -Xcudafe --diag_suppress=unrecognized_attribute \
   -gencode arch=compute_35,code="compute_35" \
   -gencode arch=compute_52,code="compute_52" \
   -gencode arch=compute_60,code="compute_60" \
   --std c++11 -lineinfo \
   -ccbin $(CXX) -DFAISS_USE_FLOAT16
# BLAS LD flags for nvcc (used to generate an executable)
# if BLASLDFLAGS contains several flags, each one may
# need to be prepended with -Xlinker
BLASLDFLAGSNVCC=-Xlinker $(BLASLDFLAGS)
# Same, but to generate a .so
BLASLDFLAGSSONVCC=-Xlinker  $(BLASLDFLAGS)

scp l_mkl_2017.0.098.tgz yingmin.li@yz-gpu023.hogpu.cc:/home/users/yingmin.li/temp
只要输入了serial number（3VGW-N6PJ7GCN）就行，选3用user安装
$MKLROOT = /home/users/yingmin.li/intel/compilers_and_libraries/linux/mkl
echo 'export LD_LIBRARY_PATH="/home/users/yingmin.li/intel/compilers_and_libraries/linux/mkl/lib/intel64:$LD_LIBRARY_PATH"' >> ~/.bashrc
echo 'export LD_PRELOAD="/home/users/yingmin.li/intel/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_core.so:/home/users/yingmin.li/intel/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_sequential.so:$LD_PRELOAD"' >> ~/.bashrc
source ~/.bashrc
make clean
make

测试：

A basic usage example is in
demos/demo_ivfpq_indexing
it makes a small index, stores it and performs some searches. A normal runtime is around 20s. With a fast machine and Intel MKL's BLAS it runs in 2.5s.

GPU机子上疑似变慢了！

怀疑有人占用GPU资源：

nvidia-smi #查询GPU占用率
watch -n 1 nvidia-smi #1s刷新一次
free -m #内存
top #CPU使用率
htop #CPU使用： https://linux.cn/article-3141-1.html