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@zhoujj2013 2016-03-06T09:34:32.000000Z 字数 350 阅读 419

20160306-anno pipeline for RNA-seq

todo


anno pipeline for RNA-seq

  1. build db for every species
  2. if the species information unknown, blast to nt or nr db;
  3. if the species information unknown, blast to uniprot or trembl is better;
  4. build a pipeline for generate annotation databases;

build a pipeline for DEGs analysis

  1. naive method;
  2. cuffdiff
  3. edger
  4. EBseq

I don't want to try many method, just these 2 or 4 method.
Only choose 2.

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