@zhoujj2013
2017-08-12T05:29:36.000000Z
字数 1057
阅读 470
A003 蛋白序列／核酸序列注释
service
swiss-prot注释
| 蛋白序列ID |
swiss-prot蛋白ID |
目标蛋白序列比对率 |
swiss-prot蛋白比对率 |
Evalue |
DESC |
| LYC_001 |
Q34979 |
60% |
80% |
0.0001 |
Myogenic Factor 4 |
| LYC_001 |
Q34979 |
60% |
80% |
0.0001 |
Myogenic Factor 4 |
| LYC_001 |
Q34979 |
60% |
80% |
0.0001 |
Myogenic Factor 4 |
KEGG注释
| 蛋白序列ID |
KEGG蛋白ID |
目标蛋白序列比对率 |
KEGG蛋白比对率 |
Evalue |
DESC |
| LYC_001 |
Q34979 |
60% |
80% |
0.0001 |
Myogenic Factor 4 |
| LYC_001 |
Q34979 |
60% |
80% |
0.0001 |
Myogenic Factor 4 |
| LYC_001 |
Q34979 |
60% |
80% |
0.0001 |
Myogenic Factor 4 |
Interpro注释
| 蛋白序列ID |
InterPro ID |
目标蛋白序列比对率 |
InterPro蛋白比对率 |
Evalue |
DESC |
| LYC_001 |
Q34979 |
60% |
80% |
0.0001 |
Myogenic Factor 4 |
| LYC_001 |
Q34979 |
60% |
80% |
0.0001 |
Myogenic Factor 4 |
| LYC_001 |
Q34979 |
60% |
80% |
0.0001 |
Myogenic Factor 4 |
注释结果
| Database |
Swiss-prot |
KEGG |
InterPro |
| 比对上的蛋白数目 |
5000 |
4500 |
4000 |
| 比对上的蛋白% |
50% |
45% |
40% |
| 总蛋白序列 |
10000 |
10000 |
10000 |
参考文献
- Boutet, Emmanuel, et al. "UniProtKB/Swiss-Prot, the manually annotated section of the UniProt KnowledgeBase: how to use the entry view." Plant bioinformatics: methods and protocols (2016): 23-54.
- Kanehisa, Minoru, et al. "KEGG: new perspectives on genomes, pathways, diseases and drugs." Nucleic acids research 45.D1 (2017): D353-D361.
- Finn, Robert D., et al. "InterPro in 2017—beyond protein family and domain annotations." Nucleic acids research 45.D1 (2016): D190-D199.
